Package: ClusROC 1.0.2

ClusROC: ROC Analysis in Three-Class Classification Problems for Clustered Data

Statistical methods for ROC surface analysis in three-class classification problems for clustered data and in presence of covariates. In particular, the package allows to obtain covariate-specific point and interval estimation for: (i) true class fractions (TCFs) at fixed pairs of thresholds; (ii) the ROC surface; (iii) the volume under ROC surface (VUS); (iv) the optimal pairs of thresholds. Methods considered in points (i), (ii) and (iv) are proposed and discussed in To et al. (2022) <doi:10.1177/09622802221089029>. Referring to point (iv), three different selection criteria are implemented: Generalized Youden Index (GYI), Closest to Perfection (CtP) and Maximum Volume (MV). Methods considered in point (iii) are proposed and discussed in Xiong et al. (2018) <doi:10.1177/0962280217742539>. Visualization tools are also provided. We refer readers to the articles cited above for all details.

Authors:Duc-Khanh To [aut, cre], with contributions from Gianfranco Adimari and Monica Chiogna

ClusROC_1.0.2.tar.gz
ClusROC_1.0.2.zip(r-4.7)ClusROC_1.0.2.zip(r-4.6)ClusROC_1.0.2.zip(r-4.5)
ClusROC_1.0.2.tgz(r-4.6-x86_64)ClusROC_1.0.2.tgz(r-4.6-arm64)ClusROC_1.0.2.tgz(r-4.5-arm64)ClusROC_1.0.2.tgz(r-4.5-x86_64)
ClusROC_1.0.2.tar.gz(r-4.7-arm64)ClusROC_1.0.2.tar.gz(r-4.7-x86_64)ClusROC_1.0.2.tar.gz(r-4.6-arm64)ClusROC_1.0.2.tar.gz(r-4.6-x86_64)
ClusROC_1.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html
DESCRIPTION |NEWS
card.svg |card.png
ClusROC/json (API)

# Install 'ClusROC' in R:
install.packages('ClusROC', repos = c('https://toduckhanh.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/toduckhanh/clusroc/issues

Uses libs:
  • c++– GNU Standard C++ Library v3
Datasets:

On CRAN:

Conda:

biomakerbox-cox-transformationmixed-effects-modelsoptimal-thresholdreciver-operating-characteristicscpp

2.70 score 7 scripts 374 downloads 6 exports 104 dependencies

Last updated from:70eb50546c. Checks:11 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64NOTE293
linux-devel-x86_64NOTE341
source / vignettesOK235
linux-release-arm64NOTE292
linux-release-x86_64NOTE280
macos-release-arm64NOTE173
macos-release-x86_64NOTE592
macos-oldrel-arm64NOTE210
macos-oldrel-x86_64NOTE504
windows-develNOTE244
windows-releaseNOTE247
windows-oldrelNOTE224
wasm-releaseOK211

Exports:ci_clus_vusclus_lmeclus_opt_thres3clus_roc_surfaceclus_tcfsclus_vus

Dependencies:abindbackportsbase64encbootbroombslibcachemcarcarDataclicodetoolscolorspacecorrplotcowplotcpp11DerivdigestdoBydoParalleldplyrellipseevaluatefarverfastmapfontawesomeforeachforecastFormulafracdifffsgenericsggplot2ggpubrggrepelggsciggsignifgluegridExtragtablehighrhtmltoolshtmlwidgetsisobanditeratorsjquerylibjsonliteknitrlabelinglatticelifecyclelme4lmtestmagrittrMASSMatrixMatrixModelsmemoisemgcvmimeminqamodelrnlmenloptrnnetnumDerivpbkrtestpillarpkgconfigpolynompurrrquantregR6rappdirsrbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRdpackreformulasrglrlangrmarkdownrstatixS7sassscalesSparseMstringistringrsurvivaltibbletidyrtidyselecttimeDatetinytexurcautf8vctrsviridisLitewithrxfunyamlzoo